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BIOINFORMATIC ANALYSIS OF GENOMIC ISLANDS IN WHOLE GENOMES OF PISCIRICKETTSIA SALMONIS STRAINS
Table 1 - Genomes of strains selected for in silico evaluation of genomic islands
Genogroup | Strain | Isolation year | Species of origin | N° of plasmids | Genome size (Mb) | Annotated genes | Accession number (NCBI) |
LF | LF-89 1 | 1989 | O. kisutch | 4 | 3.50 | 3651 | CP011849.2 |
LF | Psal-006b | 1997 | S. salar | 5 | 3.47 | 3680 | CP038898.1 |
LF | Psal-009 | 2000 | O. kisutch | 4 | 3.56 | 3791 | CP038908.1 |
LF | Psal-011 | 2013 | S. salar | 3 | 3.42 | 3672 | CP038923.1 |
EM | Psal-001 | 1990 | O. kisutch | 4 | 3.41 | 3680 | CP038811.1 |
EM | Psal-005 | 1991 | S. salar | 1 | 3.33 | 3524 | CP038891.1 |
EM | Psal-069 | 2016 | S. salar | 2 | 3.38 | 3626 | CP038972.1 |
EM | Psal-072 | 2017 | S. salar | 5 | 3.71 | 3929 | CP039040.1 |